Calling narrow and broad peaks from ChIP-Seq data in Strand NGS

by Rohit Gupta and Anita Sathyanarayanan

Know about the state-of-the-art algorithms implemented in Strand NGS for detecting the binding sites of transcription factor (narrow peaks) and enriched regions of histone modification (broad peaks) from ChIP-Seq data.

Integrated mRNA and microRNA transcriptome analysis in Strand NGS

by Veena Hedatale and Rohit Gupta

Using a nasopharyngeal carcinoma case study, this paper highlights the integrated transcriptome analysis capabilities of Strand NGS demonstrating the identification of miRNA-mRNA interactions in regulatory networks.

Integrative RNA and ChIP-Seq analysis of regulatory T-cells in Strand NGS

by Aishwarya Narayanan, Veena Hedatale and Rohit Gupta

This paper describes how integrated multi-omics functionality in Strand NGS was used to find the regulatory role of FoxP3 in T-regulatory and T-helper cells. Learn how the gene expression profiles from RNA-Seq and FoxP3 DNA-protein binding sites from ChIP-Seq are integrated.

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