Publications | Strand NGS | Next generation sequencing

Selected publications citing Strand NGS - formerly Avadis NGS

2017

Paternal aging over a natural lifetime is directly associated with genetic and epigenetic alterations in the male gamete
Read more

Arid1b Haploinsufficiency Causes Abnormal Brain Gene Expression and Autism-Related Behaviors in Mice
Read more

Integrative model of leukocyte genomics and organ dysfunction in heart failure patients requiring mechanical circulatory support: a prospective observational study
Read more

Myomerger induces fusion of non-fusogenic cells and is required for skeletal muscle development
Read more

Bisphenol A induced apoptosis and transcriptome differences of spermatogonial stem cells in vitro
Read more

Interaction between photosynthetic electron transport and chloroplast sinks triggers protection and signalling important for plant productivity
Read more

Colitic Cancer Develops Through Mutational Alteration Distinct from that in Sporadic Colorectal Cancer: A Comparative Analysis of Mutational Rates at Each Step
Read more

Adult cardiac stem cells are multipotent and robustly myogenic: c-kit expression is necessary but not sufficient for their identification
Read more

Gene duplication in Pseudomonas aeruginosa improves growth on adenosine
Read more

A complement-dependent human long-noncoding RNA induced by Staphylococcus aureus
Read more

Quantitative Assessment of Neural Retina Morphology, Function, and DNA Methylation in an Experimental Model of Diabetic Retinopathy
Read more

Differentially expressed genes in mycorrhized and nodulated roots of common bean are associated with defense, cell wall architecture, N metabolism, and P metabolism
Read more

Transcription of Repeats Activates INterferon (TRAIN) in response to chromatin destabilization induced with anti-cancer small molecule
Read more

3-O-trans-p-coumaroyl-alphitolic acid, a triterpenoid from Zizyphus jujuba, leads to apoptotic cell death in human leukemia cells through reactive oxygen species production and activation of the unfolded protein response
Read more

Increased Susceptibility to Structural Acute Kidney Injury in a Mouse Model of Presymptomatic Cardiomyopathy
Read more

The first sporadic case of DFNA11 identified by next-generation sequencing
Read more

Genetic studies in a patient with X-linked retinoschisis coexisting with developmental delay and sensorineural hearing loss
Read more

OxyR-activated expression of Dps is important for Vibrio cholerae oxidative stress resistance and pathogenesis
Read more

Bisphenol A induced apoptosis and transcriptome differences of spermatogonial stem cells in vitro
Read more

Identification of Osr2 Transcriptional Target Genes in Palate Development
Read more

Cochlear Transcriptome Following Acoustic Trauma and Dexamethasone Administration Identified by a Combination of RNA-seq and DNA Microarray
Read more

Using whole exome sequencing to investigate the genetic bases of lysosomal storage diseases of unknown etiology
Read more

Genetic Enhancer Analysis Reveals that FLORAL ORGAN NUMBER2 and OsMADS3 Co-operatively Regulate Maintenance and Determinacy of the Flower Meristem in Rice
Read more

Intratumoral acidosis fosters cancer-induced bone pain through the activation of the mesenchymal tumor-associated stroma in bone metastasis from breast carcinoma
Read more

Investigations on the role of microRNAs and gene polymorphisms in the pathogenesis of primary Sjögren’s syndrome
Read more

Stepwise approach to oocyte depletion in Sry mutated XY female mice
Read more

TRAIN in response to treatment with anti-cancer small molecule destabilizing chromatin
Read more

Multifunctional glial support by Semper cells in the Drosophila retina
Read more

Increased S100A15 expression and decreased DNA methylation of its gene promoter are involved in high metastasis potential and poor outcome of lung adenocarcinoma
Read more

Clinical and genetic analysis of Indian patients with NDP-related retinopathies
Read more

Cancer-associated mesenchymal stroma fosters the stemness of osteosarcoma cells in response to intratumoral acidosis via NF-κB activation
Read more

Airway Epithelial Cells Enhance the Immunogenicity of Human Myeloid Dendritic Cells under Steady State
Read more

StrandAdvantage test for early-line and advanced-stage treatment decisions in solid tumors
Read more

The significant expression of TRPV3 in nasal polyps of eosinophilic chronic rhinosinusitis
Read more

Six GU-rich (6GUR) FUS-binding motifs detected by normalization of CLIP-seq by Nascent-seq
Read more

Dynamic Phenotypic Transition of Breast Cancer Cells In Vitro Revealed by Self-floating Cell Culture
Read more

Frequent somatic mutations in epigenetic regulators in newly diagnosed chronic myeloid leukemia
Read more

The effect of extracellular acidosis on the behaviour of mesenchymal stem cells in vitro
Read more

In the hunt for genomic markers of metabolic resistance to pyrethroids in the mosquito Aedes aegypti: An integrated next-generation sequencing approach
Read more

Myomerger Induces Fusion Of Non-Fusogenic Cells And Is Required For Myoblast Fusion
Read more

Upregulation of distinct collagen transcripts in post-surgery scar tissue: a study of conjunctival fibrosis
Read more

MicroRNA expression profiles identify disease-specific alterations in systemic lupus erythematosus and primary Sjo¨gren’s syndrome
Read more

Inhibition of MAPK‐Erk pathway in vivo attenuates aortic valve disease processes in Emilin1‐deficient mouse model
Read more

Whole exome sequencing of discordant diseases in Monozygotic twins with Down syndrome reveals mutations for Congenital Heart Defect and epileptic seizures
Read more

A Knockin Reporter Allows Purification and Characterization of mDA Neurons from Heterogeneous Populations
Read more

The Clinical Next-Generation Sequencing Database: A Tool for the Unified Management of Clinical Information and Genetic Variants to Accelerate Variant Pathogenicity Classification
Read more

Leukocyte Time-Dependent Biology and Outcomes in Advanced Heart Failure
Read more

Universal Human Papillomavirus Typing Assay: Whole-Genome Sequencing following Target Enrichment
Read more

Identification and Characterization of a Missense Mutation in the O-GlcNAc Transferase Gene that Segregates with X-Linked Intellectual Disability
Read more

Canonical Wnt Signaling Ameliorates Aging of Intestinal Stem Cells
Read more

Cilia-dependent GLI processing in neural crest cells is required for tongue development
Read more

Prevalence and coexistence of KRAS, BRAF, PIK3CA, NRAS, TP53, and APC mutations in Indian colorectal cancer patients: Next- generation sequencing–based cohort study
Read more

Defining age- and lactocrine-sensitive elements of the neonatal porcine uterine microRNA–mRNA interactome
Read more

Genetic characterization of Polish ccRCC patients: somatic mutation analysis of PBRM1, BAP1 and KDMC5, genomic SNP array analysis in tumor biopsy and preliminary results of chromosome aberrations analysis in plasma cell free DNA
Read more

Mining Cancer Transcriptomes: Bioinformatic Tools and the Remaining Challenges
Read more

OxyR-activated expression of Dps is important for Vibrio cholerae oxidative stress resistance and pathogenesis
Read more

OxyR2 Modulates OxyR1 Activity and Vibrio cholerae Oxidative Stress Response
Read more

Altered methylation of specific DNA loci in the liver of Bhmt-null mice results in repression of Iqgap2 and F2rl2 and is associated with development of preneoplastic foci
Read more

Genomic Profiling in Non-Small Cell Lung Cancer: New Hope for Personalized Medicine
Read more

Endocan as a prognostic biomarker of triple-negative breast cancer
Read more

Modulation of microRNA-mRNA Target Pairs by Human Papillomavirus 16 Oncoproteins
Read more

Genomic Profiling in Non-Small Cell Lung Cancer: New Hope for Personalized Medicine
Read more

Deep Transcriptomic Profiling of M1 Macrophages Lacking Trpc3
Read more

The Glucocorticoid Receptor Regulates the ANGPTL4 Gene in a CTCF-Mediated Chromatin Context in Human Hepatic Cells
Read more

2016

Engineered human pluripotent-stem-cell-derived intestinal tissues with a functional enteric nervous system
Read more

Translational profiling of stress-induced neuroplasticity in the CA3 pyramidal neurons of BDNF Val66Met mice
Read more

Human gingiva transcriptome during wound healing
Read more

Recurrent mutations in NF-κB pathway components, KMT2D, and NOTCH1/2 in ocular adnexal MALT-type marginal zone lymphomas
Read more

One-carbon metabolism and hepatocellular carcinoma
Read more

Osteocrin, a peptide secreted from the heart and other tissues, contributes to cranial osteogenesis and chondrogenesis in zebrafish
Read more

Novel PDE10A transcript diversity in the human striatum: Insights into gene complexity, conservation and regulation
Read more

Universal Human Papillomavirus Typing Assay: Whole Genome Sequencing Following Target Enrichment
Read more

Clinical Next-Generation Sequencing Database: A Tool for the Unified Management of Clinical Information and Genetic Variants to Accelerate Variant Pathogenicity Classification
Read more

The mammalian LINC complex regulates genome transcriptional responses to substrate rigidity
Read more

Genotype-Phenotype Analysis in an Indian Family Affected with Li-Fraumeni Syndrome-Role of Genetic Counselling
Read more

Incidental Findings in Male Breast Carcinoma: A Genetic Counseling Approach
Read more

Cancer-associated mesenchymal stroma fosters the stemness of osteosarcoma cells in response to intratumoral acidosis via NF-κB acivation
Read more

Endocan as a prognostic biomarker of triple-negative breast cancer
Read more

Shifting transcriptional machinery is required for long-term memory maintenance and modification in Drosophila mushroom bodies
Read more

A Japanese Case of Ichthyosiform Erythroderma with a Novel Mutation in NIPAL4/Ichthyin
Read more

Hydroxyl-HIF2-alpha is potential therapeutic target for renal cell carcinomas
Read more

KiSS1 Is a Regulator of ADAMTS4 and ADAMTS5 Expression and Is Post-Transcriptionally Regulated By Micro-RNA N105 in Human OA Chondrocytes
Read more

High-density array-CGH with targeted NGS unmask multiple noncontiguous minute deletions on chromosome 3p21 in mesothelioma
Read more

Protective neutralizing influenza antibody response in the absence of T follicular helper cells
Read more

Massive parallel sequencing and digital gene expression analysis reveals potential mechanisms to overcome therapy resistance in pulmonary neuroendocrine tumors
Read more

Nucleotide substitutions in CD101, the human homolog of a diabetes susceptibility gene in nonobese diabetic mouse, in patients with type 1 diabetes
Read more

Maintenance of Xist Imprinting Depends on Chromatin Condensation State and Rnf12 Dosage in Mice
Read more

Isolation of New Gravitropic Mutants under Hypergravity Conditions
Read more

Intrinsic Resistance to 5-Fluorouracil in a Brain Metastatic Variant of Human Breast Cancer Cell Line, MDA-MB-231BR
Read more

Next-generation sequencing-based method shows increased mutation detection sensitivity in an Indian retinoblastoma cohort
Read more

Modulation of ambient temperature promotes inflammation and initiates atherosclerosis in wild type C57BL/6 mice
Read more

Bmp4-Msx1 signaling and Osr2 control tooth organogenesis through antagonistic regulation of secreted Wnt antagonists
Read more

Challenges in Targeting a Basic Helix–Loop–Helix Transcription Factor with Hydrocarbon-Stapled Peptides
Read more

Altered pH gardient at teh plasma membrane of osteosarcoma cells is a key mechanism of drug resistance
Read more

HIRA Is Required for Heart Development and Directly Regulates Tnni2 and Tnnt3
Read more

Epithelial expression of human ABO blood-group genes is dependent upon a downstream regulatory element functioning through an epithelial cell-specific transcription factor, Elf5
Read more

Targeted molecular profiling of rare genetic alterations in colorectal cancer using next-generation sequencing
Read more

Supporting Biomedical Research in the Era of Omics and Precision Medicine
Read more

The LG/J Murine Strain Exhibits Near-Normal Tendon Biomechanical Properties Following a Full-Length Central Patellar Tendon Defect
Read more

Gene Panel Testing in Epileptic Encephalopathies and Familial Epilepsies
Read more

De Novo Assembly of the Transcriptome of Turritopsis, a Jellyfish that Repeatedly Rejuvenates
Read more

HIRA Is Required for Heart Development and Directly Regulates Tnni2 and Tnnt3
Read more

Conservation of protein abundance patterns reveals the regulatory architecture of the EGFR-MAPK pathway
Read more

Application of targeted enrichment to next-generation sequencing of retroviruses integrated into the host human genome
Read more

Genome-wide targets regulated by the OsMADS1 transcription factor reveals its DNA recognition properties
Read more

TNF activation of NF-κB is essential for development of single-positive thymocytes
Read more

Complete in vitro generation of fertile oocytes from mouse primordial germ cells
Read more

Homozygosity mapping guided next generation sequencing to identify the causative genetic variation in inherited retinal degenerative diseases
Read more

Mutations Causing Slow-Channel Myasthenia Reveal that a Valine ring in the Channel Pore of Muscle AChR is Optimized for Stabilizing Channel Gating
Read more

Tungstate treatment of the Dysbiosis associated with Gastrointestinal inflammation
Read more

The Human Toxome Collaboratorium: A Shared Environment for Multi-Omic ComputationalCollaboration within a Consortium
Read more

Design of pathway-preferential estrogens that provide beneficial metabolic and vascular effects without stimulating reproductive tissues
Read more

Next-Generation Sequencing Technology Detects Deletions in the RB1 Gene, Ranging from a Single Base Pair to Whole Gene (~170 kb) with a Higher Sensitivity than FISH
Read more

Utility of Lymphoblastoid Cell Lines for Induced Pluripotent Stem Cell Generation
Read more

Plasma membrane H+-ATPase1 (AHA1) plays a major role in Arabidopsis thaliana for stomatal opening in response to blue light
Read more

Functional Neurons Generated from T Cell-Derived Induced Pluripotent Stem Cells for Neurological Disease Modeling
Read more

Methylation correlates with suppressed expression of immunomodulatory genes in the tumor-adjacent stroma of African American Prostate Cancer compared patients of European American ancestory
Read more

Comprehensive analysis of BRCA (BRCAm) and other germline mutations (GRm) with a clinicopathological association in breast cancer: An Indian study
Read more

SWR1 chromatin-remodelling complex subunits and H2A.Z have non-overlapping functions in immunity and gene regulation in Arabidopsis
Read more

miR-135b, a key regulator of malignancy, is linked to poor prognosis in human myxoid liposarcoma
Read more

Bisulfite oligonucleotide-capture sequencing for targeted base- and strand-specific absolute 5-methylcytosine quantitation
Read more

A homeobox protein, NKX6.1, up-regulates interleukin-6 expression for cell growth in basal-like breast cancer cells
Read more

Laminin regulates PDGFRβ+ cell stemness and muscle development
Read more

Aberrant transcriptional pathways in t(12;21) Acute Lymphoblastic Leukemia
Read more

ZmNAC55, a maize stress-responsive NAC transcription factor, confers drought resistance in transgenic Arabidopsis
Read more

Micro-RNA expression profiling by next-generation sequencing identified novel micro-rnas that are differentially expressed in oa cartilage and chondrocytes
Read more

Efficient in planta detection and dissection of de novo mutation events in the Arabidopsis thaliana disease resistance gene UNI
Read more

A homeobox protein, NKX6.1, up-regulates interleukin-6 expression for cell growth in basal-like breast cancer cells
Read more

Deep sequencing leads to the identification of eukaryotic translation initiation factor 5a as a key element in Rsv1-mediated lethal systemic hypersensitive response to Soybean mosaic virus infection in Soybean
Read more

Genome-Wide Investigation Using sRNA-Seq, Degradome-Seq and Transcriptome-Seq Reveals Regulatory Networks of microRNAs and Their Target Genes in Soybean during Soybean mosaic virus Infection
Read more

Clinical characteristics of a Japanese family with hearing loss accompanied by compound heterozygous mutations in LOXHD1
Read more

Intratumoral heterogeneity identified at the epigenetic, genetic and transcriptional level in glioblastoma
Read more

Multigene profiling to identify clinically relevant actionable mutations in breast cancer: An Indian study
Read more

The Human Toxome Collaboratorium: A Shared Environment for Multi-Omic Computational Collaboration within a Consortium
Read more

Prenatal genetic diagnosis of retinoblastoma and report of RB1 gene mutation from India
Read more

Delineation of metabolic gene clusters in plant genomes by chromatin signatures
Read more

The retrovirus HTLV-1 inserts an ectopic CTCF-binding site into the human genome
Read more

Corona cell RNA sequencing from individual oocytes revealed transcripts and pathways linked to euploid oocyte competence and live birth
Read more

Detection of high frequency of mutations in a breast and/or ovarian cancer cohort: implications of embracing a multi-gene panel in molecular diagnosis in India
Read more

Altered cholesterol biosynthesis causes precocious neurogenesis in the developing mouse forebrain
Read more

Identification and Validation of Housekeeping Genes for Gene Expression Analysis of Cancer Stem Cells
Read more

The renewed battle against RAS-mutant cancers
Read more

Gene expression profiling of white adipose tissue reveals paternal transmission of proneness to obesity
Read more

MicroRNA-27b Enhances the Hepatic Regenerative Properties of Adipose-Derived Mesenchymal Stem Cells
Read more

Systemic Chromosome Instability Resulted in Colonic Transcriptomic Changes in Metabolic, Proliferation, and Stem Cell Regulators in Sgo1−/+ Mice
Read more

Dissecting the molecular mechanisms of the TGF-ß/BMP signal transduction pathways mapping new players and critically assessing established tools
Read more

From Conventional to Next Generation Sequencing of Epstein-Barr Virus Genomes
Read more

A Shh-Foxf-Fgf18-Shh Molecular Circuit Regulating Palate Development
Read more

2015

Simultaneous targeting of 5-LOX-COX and EGFR blocks progression of pancreatic ductal adenocarcinoma
Read more

Transcriptional Regulation of development and tumor-induced Angiogenesis by Etv2 and Fli1b
Read more

Screening of an Indian cohort with breast and/or ovarian cancer by a next-generation sequencing-based panel to detect a high frequency of mutations
Read more

Etv2 and Fli1b Function Together as Key Regulators of Vasculogenesis and Angiogenesis
Read more

An integrative model of leukocyte genomics and organ dysfunction in heart failure patients requiring mechanical circulatory support
Read more

CRCDA—Comprehensive resources for cancer NGS data analysis
Read more

Genetic and epigenetic characterization of hypodiploid acute lymphoblastic leukemia
Read more

Assessment of individual differences in the rat nucleus accumbens transcriptome following taste-heroin extended access
Read more

The Human Milk Oligosaccharide 2'-Fucosyllactose Augments the Adaptive Response to Extensive Intestinal Resection
Read more

Tie2 Signaling Enhances Mast Cell Progenitor Adhesion to Vascular Cell Adhesion Molecule-1 (VCAM-1) through [alpha] 4[Beta]1 Integrin: e0144436
Read more

Sex Specification and Heterogeneity of Primordial Germ Cells in Mice: e0144836
Read more

Adeno-associated Virus Gene Therapy Vector scAAVIGF-I for Transduction of Equine Articular Chondrocytes and RNA-Seq Analysis
Read more

Translational Regulation of the Mitochondrial Genome Following Redistribution of Mitochondrial MicroRNA in the Diabetic Heart
Read more

Intratumoral heterogeneity of DNA repair pathways in glioblastoma
Read more

Age and Nursing Affect the Neonatal Porcine Uterine Transcriptome
Read more

O-linked β-N-acetylglucosamine (O-GlcNAc) acts as a glucose sensor to epigenetically regulate the insulin gene in pancreatic beta cells
Read more

Changes in Methionine Metabolism and Histone H3 Trimethylation Are Linked to Mitochondrial Defects in Multiple Sclerosis
Read more

The gene expression in rat liver carcinogenesis And exhaustive analysis of DNA methylation
Read more

Identification of Novel Micro-RNAs in IL-1β-Stimulated OA Chondrocytes By Next-Generation Sequencing
Read more

Multi-Omics Analysis for Understanding the Molecular Basis of Lung Adenocarcinoma
Read more

De novo point mutations in the male gamete are directly associated with paternal aging and reduced fecundity
Read more

Clinical utility of profiling somatic alterations in Indian cancer patients using a multi-gene next generation sequencing (NGS) test
Read more

Neuronopathic Gaucher Disease: Dysregulated mRNAs and miRNAs in brain pathogenesis and effects of pharmacologic chaperone treatment in a mouse model
Read more

Nutrigenomics in livestock: systems biology meets nuitrition
Read more

Imbalance between the expression dosages of X-chromosome and autosomal genes in mammalian oocytes
Read more

Sequential Binding of MEIS1 and NKX2-5 on the Popdc2 Gene: A Mechanism for Spatiotemporal Regulation of Enhancers during Cardiogenesis
Read more

Detection, validation and visualization of copy number variations in targeted panels without matched normal samples using next generation sequencing data
Read more

β-Caryophyllene attenuates dextran sulfate sodium-induced colitis in mice via modulation of gene expression associated mainly with colon inflammation
Read more

Detection of translocations in clinical cancer samples using targeted NGS data
Read more

Benchmarking Strand NGS RNA aligner against TopHat2 and other common splice aligners
Read more

An integrated RNA and DNA approach to unravel genetic regulation in cancer
Read more

IDH mutant to activate the Hoxa9 / Meis1 path and the low- oxygen signal in acute myeloid leukemia onset model mice
Read more

β-Naphthoflavone induces oxidative stress in the intertidal copepod, Tigriopus japonicus
Read more

A transposable element in a NAC gene is associated with drought tolerance in maize seedling
Read more

Alterations in serum microRNA in humans with alcohol use disorders impact cell proliferation and cell death pathways and predict structural and functional changes in brain
Read more

Novel roles for LIX1L in promoting cancer cell proliferation through ROS1-mediated LIX1L phosphorylation
Read more

An integrated transcriptomics and proteomics study of Head and Neck Squamous Cell Carcinoma – methodological and analytical considerations
Read more

K-bZIP Mediated SUMO-2/3 Specific Modification on the KSHV Genome Negatively Regulates Lytic Gene Expression and Viral Reactivation
Read more

Testicular dysgenesis/regression without campomelic dysplasia in patients carrying missense mutations and upstream deletion of SOX9
Read more

Multi-Omics Analysis for Understanding the Molecular Basis of Lung Adenocarcinoma
Read more

The transcription factors SOX9 and SOX5/SOX6 cooperate genome-wide through super-enhancers to drive chondrogenesis
Read more

Methods and Techniques for miRNA Data Analysis
Read more

A novel missense mutation of RYR1 in familial idiopathic hyper CK-emia
Read more

A comparative analysis of high-throughput platforms for validation of a circulating microRNA signature in diabetic retinopathy
Read more

Simulating BZIP2 compression using MAPLE and MAPLET interative applications
Read more

A Comprehensive Profile of ChIP-Seq-Based Olig2 Target Genes in Motor Neuron Progenitor Cells Suggests the Possible Involvement of Olig2 in the Pathogenesis of Amyotrophic Lateral Sclerosis
Read more

Lactocrine signaling and neonatal porcine reproductive tract development
Read more

Cellular Response to ATM Deletion: A Multi-Omics Approach
Read more

Information Flow from Strand NGS 2.1 to GeneSpring 13.0
Read more

Correlation Analysis in Agilent GeneSpring and Mass Profiler Professional
Read more

A missense mutation in domain III in HSPG2 in Schwartz–Jampel syndrome compromises secretion of perlecan into the extracellular space
Read more

Epstein–Barr Virus Genetic Variation in Lymphoblastoid Cell Lines Derived from Kenyan Pediatric Population
Read more

Identification of Non-Coding RNAs Associated with Telomeres Using a Combination of enChIP and RNA Sequencing
Read more

IDH2 and NPM1 mutations cooperate to activate Hoxa9/Meis1 and hypoxia pathways in acute myeloid leukemia
Read more

Identification of novel mutations in ABCA4 gene: Clinical and Genetic analysis of Indian patients with Stargardt disease
Read more

Whole transcriptome expression profiling of mouse limb tendon development by using RNA‐seq
Read more

A Cell-Based Systems Biology Assessment of Human Blood to Monitor Immune Responses after Influenza Vaccination
Read more

Bioinformatics data mining approach indicates the expression of chromatin immunoprecipitation followed by deep sequencing (ChIP- Seq)-based hypoxia-inducible factor-1α target genes in periplaque lesions of multiple sclerosis
Read more

FT-like proteins induce transposon silencing in the shoot apex during floral induction in rice
Read more

Long-Term Safety Issues of iPSC-Based Cell Therapy in a Spinal Cord Injury Model: Oncogenic Transformation with Epithelial- Mesenchymal Transition
Read more

Lysine-specific demethylase LSD2 suppresses lipid influx and metabolism in hepatic cells
Read more

Pathogenesis of Soybean mosaic virus in soybean carrying Rsv1 gene is associated with miRNA and siRNA pathways, and breakdown of AGO1 homeostasis
Read more

A Zap70-dependent feedback circuit is essential for efficient selection of CD4 lineage thymocytes
Read more

2014

A study on the influence of different promoter and 5′ UTR (URM) cassettes from Arabidopsis thaliana on the expression level of the reporter gene β glucuronidase in tobacco and cotton
Read more

A Genome-Wide Transcriptome Analysis Reveals the Differentially Expressed Genes (DEGs) in Panicle of Hybrids and Parents
Read more

Identifying and Evaluating Novel biological targets to improve Musculoskeletal Tissue Engineering Strategies
Read more

Identification of microRNAs involved in acute rejection and spontaneous tolerance in murine hepatic allografts
Read more

Islet Microenvironment, Modulated by Vascular Endothelial Growth Factor-A Signaling, Promotes β Cell Regeneration
Read more

Loss of Ikaros DNA-binding function confers integrin-dependent survival on pre-B cells and progression to acute lymphoblastic leukemia
Read more

Localised Dominant Dystrophic Epidermolysis Bullosa with a Novel de Novo Mutation in COL7A1 Diagnosed by Next-generation Sequencing
Read more

Genome-Wide Analysis of DNA Methylation Dynamics during Early Human Development
Read more

A Comprehensive Profile of ChIP-Seq-Based PU.1/Spi1 Target Genes in Microglia
Read more

A class of genes in the HER2 regulon that is poised for transcription in breast cancer cell lines and expressed in human breast tumors
Read more

The head and neck cancer cell oncogenome: a platform for the development of precision molecular therapies
Read more

S1P-Yap1 Signaling Regulates Endoderm Formation Required for Cardiac Precursor Cell Migration in Zebrafish
Read more

SDF-1/CXCL12 induces directional cell migration and spontaneous metastasis via a CXCR4/Gαi/mTORC1 axis
Read more

Loss of function mutations in RPL27 and RPS27 identified by whole‐exome sequencing in Diamond‐Blackfan anaemia
Read more

The role of maternal-specific H3K9me3 modification in establishing imprinted X-chromosome inactivation and embryogenesis in mice
Read more

Feasibility of Low-Throughput Next Generation Sequencing for Germline DNA Screening
Read more

RNA-seq analysis of the rat placentation site reveals maternal obesity-associated changes in placental and offspring thyroid hormone signaling
Read more

Transcriptome analysis of Musa and its Applications in Banana improvement
Read more

Method and system for genetic trait search based on the phenotype and the genome of a human subject
Read more

Sp8 Function During Craniofacial Development - A post-doctoral thesis submitted by AD Kasberg
Read more

H3K36 Histone Methyltransferase Setd2 Is Required for Murine Embryonic Stem Cell Differentiation toward Endoderm
Read more

Integrative Genomics Approach to Identify Genes Important for H2 Production by Rhodopseudomonas 
Read more

A Cross-species Comparison of the Burkholderia pseudomallei, Burkholderia thailandensis, and Burkholderia mallei Quorum Sensing Regulons
Read more

Whole Genome Sequencing Reveals Novel Non-Synonymous Mutation in Ectodysplasin A (EDA) Associated with Non-Syndromic X- Linked Dominant Congenital Tooth Agenesis
Read more

Comprehensive Next-Generation Sequencing Analyses of Hypoparathyroidism: Identification of Novel GCM2 Mutations
Read more

Google Books: Bioinformatics, Systems Biology, and Systems Medicine
Read more

Targeted deep sequencing of solid tumors to predict response to therapy: A study in an Indian population.
Read more

MicroRNA expression profiling of cat and dog kidneys
Read more

Pediatric Crohn disease patients exhibit specific ileal transcriptome and microbiome signature
Read more

Evaluation of quantitative miRNA expression platforms in the microRNA quality control (miRQC) study
Read more

Milk-borne bioactive factors: effects on neonatal porcine reproductive tissues. KM Rahman - 2014
Read more

Cleavage by signal peptide peptidase is required for the degradation of selected tail-anchored proteins
Read more

Global gene expression analysis following spinal cord injury in non-human primates
Read more

Themis2 Is Not Required for B Cell Development, Activation, and Antibody Responses
Read more

Utility of Neutrophil Fc[gamma] Receptor I (CD64) Index as a Biomarker for Mucosal Inflammation in Pediatric Crohn's Disease
Rea d more

Searching for Genomic Region of High-Fat Diet-Induced Type 2 Diabetes in Mouse Chromosome 2 by Analysis of Congenic Strains
Read more

Overlapping and Asymmetric Functions of TCR Signaling during Thymic Selection of CD4 and CD8 Lineages
Read more

Avadis NGS DNA Read Aligner - A Benchmarking study
Read more

8-oxoguanine causes spontaneous de novo germline mutations in mice
Read more

A Kir3.4 mutation causes Andersen–Tawil syndrome by an inhibitory effect on Kir2.1
Read more

Vascular endothelial growth factor coordinates islet innervation via vascular scaffolding
Read more

The genetics of chemoreception in the labella and tarsi of Aedes aegypti
Read more

MicroRNA-34c is associated with emphysema severity and modulates SERPINE1 expression
Read more

Cardiac Channelopathy Testing in 274 Ethnically Diverse Sudden Unexplained Deaths
Read more

NF-κB signaling mediates homeostatic maturation of new T cells
Read more

Genomic reconnaissance of clinical isolates of emerging human pathogen Mycobacterium abscessus reveals high evolutionary potential
Read more

Glucose Transporter 8 (GLUT8) mediates fructose-induced de novo lipogenesis and macrosteatosis
Read more

Global Analysis of the Burkholderia thailandensis quorum-sensing-controlled regulon
Read more

Maternal Obesity is Associated with a Lipotoxic Placental Environment
Read more

Identification of EMS-induced causal mutations in Arabidopsis thaliana by next-generation sequencing
Read more

2013

Making a Definitive Diagnosis: A Fast-track from Sequence to Answers
Read more

Accelerating Disease Diagnosis Through Automated Genomic Analysis
Read more

Quantitative Transcriptome Analysis Using Next Generation Sequencer Reveals Significant Alternations of Cardiac Gene Expression in Heart Failure
Read more

Genome-wide Association of Yorkie with Chromatin and Chromatin-Remodeling Complexes
Read more

Dissecting the molecular mechanisms of the TGF-ß/BMP signal transduction pathways : mapping new players and critically assessing established tools - Post-doctoral thesis submitted by Janis Vogt, 2013, University of Dundee
Read more

Improved Accuracy and Precision in Clinical Next Generation Sequencing with the SmartChip TE™ Target Enrichment System
Read more

Pathway Analysis of ChIP-Seq-Based NRF1 Target Genes Suggests a Logical Hypothesis of their Involvement in the Pathogenesis of Neurodegenerative Diseases
Read more

Gustatory receptor expression in the labella and tarsi of Aedes aegypti
Read more

Aneuploidy and normal cell contamination aware approach to detect copy number variations in cancer using next generation sequencing data.
Read more

ChIP-Seq Data Mining: Remarkable Differences in NRSF/REST Target Genes between Human ESC and ESC-Derived Neurons
Read more

Coregulation of Terpenoid Pathway Genes and Prediction of Isoprene Production in Bacillus subtilis Using Transcriptomics
Read more

Functional Development of the Octenol Response in Aedes aegypti
Read more

Roles of Bmp4 during tooth morphogenesis and sequential tooth formation
Read more

A comprehensive analysis of the human placenta transcriptome
Read more

The chromatin modification by SUMO-2/3 but not SUMO-1 prevents the epigenetic activation of key immune-related genes during Kaposi's sarcoma associated herpesvirus reactivation
Read more

LRP4 third β-propeller domain mutations cause novel congenital myasthenia by compromising agrin-mediated musk signaling in a position-specific manner
Read more

Odd-skipped related-1 controls neural crest chondrogenesis during tongue development
Read more

Diverse spectrum of rare deafness genes underlies early-childhood hearing loss in Japanese patients: a cross-sectional, multi-center next-generation sequencing study
Read more

The mitochondrial RNA landscape of Saccharomyces cerevisiae
Read more

The housekeeping gene Hypoxanthine Guanine Phosphoribosyltransferase (HPRT) regulates multiple developmental and metabolic pathways of murine embryonic stem cell neuronal differentiation
Read more

Gaucher Disease: Transcriptome analyses using microarray or mRNA sequencing in a Gba1 mutant mouse model treated with Velaglucerase alfa or Imiglucerase
Read more

Asymmetric thymocyte death underlies the CD4:CD8 T-cell ratio in the adaptive immune system
Read more

A Role for Hedgehog Signaling in the Differentiation of the Insertion Site of the Patellar Tendon in the Mouse
Read more

Recombineering-based dissection of flanking and paralogous Hox gene functions in mouse reproductive tracts
Read more

Exome sequencing of senescence-accelerated mice (SAM) reveals deleterious mutations in degenerative disease-causing genes
Read more

Study of Global Transcriptional Changes of N-GlcNAc2 Proteins-Producing T24 Bladder Carcinoma Cells under Glucose Deprivation
Read more

Time-series expression analyses using mRNA-Seq: A statistical approach
Read more

Defining Genetic Blueprints–Kidney and Craniofacial Development
Read more

Poster: 2013 – ZNF9 splicing patterns as potential prognostic markers for severity of Myotonic Dystrophy Type 2
Read more

2012

MeCP2 Binds to 5hmC Enriched within Active Genes and Accessible Chromatin in the Nervous System
Read more

Identification of a p-Coumarate Degradation Regulon in Rhodopseudomonas palustris by Xpression, an Integrated Tool for Prokaryotic RNA-Seq Data Processing
Read more

RNA-Seq defines novel genes, RNA processing patterns and enhancer maps for the early stages of nephrogenesis: Hox supergenes
Read more

Pediatric Biomedical Informatics: Computer Applications in Pediatric Research- By John J. Hutton
Read more

Bioinformatics for High Throughput Sequencing- By Naiara Rodríguez-Ezpeleta, Michael Hackenberg, Ana M. Aransay
Read more

Human ESC/iPSC-based ‘omics’ and bioinformatics for translational research
Read more

High-Throughput Sequencing Data Analysis Software: Current State and Future Developments
Read more

Time Course RNA-seq: A Potential Avenue with Somewhat Different Approach in Tandem of Differential Analysis
Read more

Comprehensive analysis of the genome transcriptome and proteome landscapes of three tumor cell lines
Read more

A Global Transcriptome Analysis of a Dog Model of Congestive Heart Failure With the Human Genome as a Reference
Read more

Strain-dependent diversity in the Pseudomonas aeruginosa quorum-sensing regulon
Read more

The ribonuclease Dis3 is an essential regulator of the developmental transcriptome
Read more

Position-dependent FUS-RNA interactions regulate alternative splicing events and transcriptions
Read more

Exome Sequencing: Capture and Sequencing of All Human Coding Regions for Disease Gene Discovery
Read more

Retinal Transcriptome Profiling by Directional Next-Generation Sequencing Using 100 ng of Total RNA
Read more

Sequencing Chromosomal Abnormalities Reveals Neurodevelopmental Loci that Confer Risk across Diagnostic Boundaries
Read more

Mutations in the Glycosylphosphatidylinositol Gene PIGL Cause CHIME Syndrome
Read more

RNA-seq Analysis of the Functional Compartments within the Rat Placentation Site
Read more

Transcriptomic landscape of breast cancers through mRNA sequencing
Read more

A novel mutation in SCN4A causes severe myotonia and school-age-onset paralytic episodes
Read more

2011

Podbat: a novel genomic tool reveals Swr1-independent H2A. Z incorporation at gene coding sequences through epigenetic meta-analysis
Read more

An Evolutionarily Conserved Long Noncoding RNA TUNA Controls Pluripotency and Neural Lineage Commitment
Read more

Pronounced and Extensive Microtubule Defects in a Saccharomyces cerevisiae DIS3 Mutant
Read more

LMO7 Mediates Cell-Specific Activation of Rho-MRTF-SRF Pathway and Plays an Important Role in Breast Cancer Cell Migration
Read more