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Streamlining large scale analysis using the Strand NGS Pipeline Manager

Abstract

Strand NGS includes comprehensive workflows for DNA-Seq, RNA-Seq, Small RNA-Seq, ChIP-Seq, MeDIP-Seq, and Methyl-Seq analysis. Each workflow includes a quality assessment and filter section, followed by a workflow-specific analysis section. The pipeline functionality in Strand NGS allows users to execute a sequence of analysis steps with specific parameters - all without any manual intervention. This simplifies the analysis in large scale sequencing projects where every sample needs to be processed identically.

In this webinar we will discuss the pre-packaged pipelines present in Strand NGS. The packaged pipelines have well-chosen default parameters and are suitable for users analyzing data for the first time in the tool. We will also show how advanced users can customize pipelines and share them with other Strand NGS users. Finally, we will show a brief glimpse of an elaborate pipeline that aligns reads, filters poor-quality matches, computes coverage metrics, identifies variants, checks for sample cross-contamination, and emails quality reports - all from within Strand NGS.

Webinar Details


Sessions San Francisco Time
(PDT)
Tokyo Time
(GMT+09:00)
Berlin Time
(GMT+01:00)
Mumbai Time
(GMT+05:30)
Session 1 24 Feb
01:00 AM
24 Feb
06:00 PM
24 Feb
10:00 AM
24 Feb
02:30 PM
Session 2 24 Feb
09:00 AM
25 Feb
02:00 AM
24 Feb
06:00 PM
24 Feb
10:30 PM

About Speaker:

Dr. Vamsi Veeramachaneni, is Vice President- Bioinformatics at Strand Life Sciences. Vamsi has a Ph.D. in Computer Science from Penn State University for work on genome assembly algorithms. His specialities include computational biology, bioinformatics, data mining, text-mining, pathway analysis, and genomics. At Strand, Vamsi guided the development of the NGS analysis and clinical genomics interpretation and reporting software platforms used in research and clinical labs worldwide. Prior to joining Strand, Vamsi worked as a Research Associate in evolutionary genomics at the Department of Biology, Penn State University. Vamsi will be available for live questions at the event.


If you missed the last webinar on 'Detection of Structural Variants in Targeted Sequencing', click here to view.

Please feel free to contact us 24/5, for availing free online training or if you have any questions.


Email: sales@strandngs.com
Phone (USA): 1-800-752-9122
Phone (Worldwide): +1-650-353-5060 
Email: support@strandngs.com
Phone (USA): 1-800-516-5181
Phone (Worldwide): +1-650-288-4559 

Thank You

The Strand NGS Team


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